Imagine a pile of bricks that eventually becomes a two-story colonial house and the wall around the estate, and the walks and patios in the gardens.
Now imagine the builder indicating that pile and saying, The kitchen's right there, I just haven't put it together yet. In that sense, kitchen was without form and void, but it was there. The whole estate was there, at the time it was just a pile of bricks. The Deep was the pile of bricks from which God formed the earth and the heavens.
Just to be clear, I don't mean the earth was a ball of rocks and dirt in the Deep, I mean that the earth was part of the water of the Deep, and that God formed the earth, and everything else in the universe, from the waters of the Deep. The earth and all the elements were made out of water...it's elements rearranged and combined...fused...into all the elements that we have discovered and classified in chemistry class.
In the beginning, God created the heavens and the earth...
Boom. The Deep is there. Then the process begins.
This is a simple picture of what is described in Genesis 1, accepting Moses's statement that the heavens and the earth, and all they contain, were made in six days.
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